The problem with that (for some people, anyway) is that it requires admitting that everything fundamentally relies upon a leap of faith. That fact means that there's no real epistemological advantage to your point of view over a batshit madman in an asylum, a cult leader, or just a theist.
Modern philosophers have come up with increasingly clever ways around the problem. For instance, one argument goes that a person saying "I'm a brain in a vat" (which is a stock metaphor for someone living in a simulated universe) can't say so meaningfully - it just doesn't mean anything and is semantically void (which is apparently similar to "false") because there is no empirical evidence for the brain in question to make the statement. I've personally never bought that simply because one really could put a brain in a vat, in a simulated universe, and it seems silly for a philosopher on the outside to point at the brain and say that the brain in question lacks the semantic rights to even posit what is, in fact, real.
This is why subjective probabilities are awesome. They don't solve the problem, but they clarify
the hell out of it.
My stance is this: yes, it requires a leap of faith to posit anything as
certain fact. But there is one thing that we can be certain of without faith, and that is our own uncertainty. We might not be able to pin down exact probabilities on what we see, but we can get a
general idea of how likely something is from our point of view.
For example, I believe that there is an
extremely low probability of my being a brain in a vat. Why? Well, the prior probability, all other things being equal, of a person being a brain-in-a-vat is quite low, and I have no specific evidence that I'm an exception to the rule.
This is not the kind of probability we get when we flip a coin ten times and ask, "Will it be heads every time?" It's not nearly that exact. But it is a lot more meaningful than quibbling over whether something is a fact or it isn't. To decide whether something's a fact, set an arbitrary probability cutoff, based on context and gut instinct. If the odds are good enough, call it a fact.
From this point of view, evolution is a fact AND a theory. It's a fact, in that the evidence in favor of common descent is so overwhelming that I can set an extremely high probability on it. It's also a theory, in that new evidence can continually refine and improve our understanding of the
mechanisms of evolution, trimming away our misconceptions.
In my field, we can't know how a given species evolved, because our group of organisms doesn't leave a good fossil record. But we can say how existing species are related to each other, and work out which ones shared common ancestors. The "theory" part is that we have to theorize to guess at what those ancestors looked like.